amplicon topic

Versatile open-source tool for microbiome analysis

torognes

Accurate sample inference from amplicon data with single nucleotide resolution

benjjneb

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

benjjneb

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

lucapinello

Assembly and intrahost/low-frequency variant calling for viral samples

nf-core

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

microsud

The is mostly a wrapper tool using phyloseq and microbiome R packages.

microsud

In-silico PCR, primer design and padlock design for in-situ sequencing

gear-genomics

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

mikessh

micca - MICrobial Community Analysis

compmetagen