10x-genomics topic
List
10x-genomics repositories
scrnaseq
209
Stars
166
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A single-cell RNAseq pipeline for 10X genomics data
awesome-10x-genomics
85
Stars
13
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List of tools and resources related to the 10x Genomics GEMCode/Chromium system
TitanCNA
92
Stars
39
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Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
cellrangerRkit
19
Stars
19
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Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
spatialvi
40
Stars
12
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Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
nanoranger
16
Stars
4
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simplified cellranger for long-read data