arriba
arriba copied to clipboard
suhrig
Fast and accurate gene fusion detection from RNA-Seq data
Dear Sebasttian First of all, thank you very much for this outstanding tool. I have the following problem. In the fusion_discarded file I have the following row gene1 gene2 strand1(gene/fusion)...
My server can not use the wget, I downloaded the data from internet and uploaded to my server? could your provide me a download_references.sh without wget? I want to build...
Hi, I am using Arriba to analyze RNA fusions. I downloaded public data from two different sources (A and B). I could successfully get final tsv files from RNA sequencing...
I run arriba 2.4.0 with an RNA-Seq sample, which detect a PML::RARA fusion. But when I grep this fusion from sample.fusions.tsv and use this tsv file to run draw_fusion.R ,...
Hello, I have an error `Segmentation fault` when I run arriba v2.4.0. I tried to debug with gdb. Below, you can find all the logs. ``` (gdb) run -x /data/sample.bam...
Is it possible to plot fusions from other tools like: fusioncatcher, puzzly, squid etc.?
Hi, thanks so much for your work on this tool! Just wanted to flag that `RefSeq_viral_genomes_v2.4.0.fa.gz` includes several sequences that are now 'suppressed' by NCBI. This suggests the sequences were...
Hi I am trying to do fusion neoantigen prediction using Arriba, however STAR can't cope with long reads and ideally STARlong should be used - do you think this will...
Hiya, Can Arriba be used to detect fusions in single-cell RNAseq data (e.g. Smart-seq2). I expect to see a greater number of false positives compared to bulk RNAseq, and with...
Hi @suhrig , I was running Arriba on this simulation dataset : https://data.broadinstitute.org/Trinity/CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101 (In the case I'm about to mention it's reads from `sim3`.) I used the default script of...
