arriba
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suhrig
Fast and accurate gene fusion detection from RNA-Seq data
Hello everyone, I was wondering whether it's possible to output the plots generated by draw_fusions.R separately. I couldn't find an option for this on the script. For my use case...
We have a fusion called SCP2-NTRK1 and we are curious as to why the fusion is being called as out of frame. The nt sequence as reported by arriba is...
Loading annotation Read 3010595 records Loading protein domains Read 134356 records Drawing fusion #1: AGAP3:BRAF Error in text.default(tip, y + 0.03, bandName, cex = fontSize, adj = c(0.5, : zero-length...
Hi, The picture below illustrates the differences between the alignment results of Arriba (v2.4.0, STAR2.7.8a) and Starfusion (v1.10.0, STAR2.7.8a). In Starfusion's BAM file, there are numerous softclip reads that support...
