Stefano Mangiola

`aggregate_cells` fails if rownames are duplicated. We need to add a check to avoid catastrophic failure.

@arashbioinfo feel free to add details on this challenge, and feel free to propose yourself as assignee

See `tidyHeatmap` as an example. We should add `tidyomics` reference. For tidySCE, tidySPE, tidySE

if `programmatic_gates` is used, we should throw a warning if the MD5 of the input does not match the one stored. Tagging @william-hutchison

- Let's ignore Seurat and SCE - Let's ignore the formula. The user will input the design matrix. data_for_model$model_input = design matrix. (instead of using the formula, this variable will...

- The main functions are in - - methods.R - - functions_multi_beta_binomial.R - - utilities.R We need to build unit tests for -- utilities.R -- functions_multi_beta_binomial.R

See `tidyHeatmap` as an example. We should add `tidyomics` reference. For tidySCE, tidySPE, tidySE

Add a check whether the columns are all sample or feature-wise, then work from the colData or rowData