Stefano Mangiola

Hello @krlmlr, please see the column `groups`

Hello, "have two overlapping group annotations as shown on the top here?" I don't see two overlapping group annotations in this figure. I just see a single grouping with number...

i see, at the moment you can have a group for dimension, and unite the columns to achieve this. I put it as feature request. But new it will have...

Maybe is not needed at all

Good question in the past I have done something like this, for upregulated and downregulated, but is not so great  But on the website there is better examples, I'm...

I'm lost with this issue? Is it still relevant?

tidybulk can be used for calculation and attr(..., "") can be used to extract raw results and plotting them. Now sure if it's too messy. OK let's try to keep...

Is this still relevant? @mblue9 any interest in doing a blog post on pathway analyses with tidybulk? so there would be a real application for me to get this improved.

> just wondering what you mean by it would be more in line with tidyverse? For example, the filter function from dplyr mention the word subset https://dplyr.tidyverse.org/reference/filter.html Plus subset is...

Yes the message on how to get them wasn't showing. Now ```r se = se |> reduce_dimensions(method="PCA") ``` ```r No group or design set. Assuming all samples belong to one...