Stefano Mangiola

@ConnieLWS found these typos tissue_harmonised still contains the following typos: plcenta vasculature I have fixed them in the csv tissue file, but I have not regenerated the metadata yet.

- [x] create a usage statistics with NECTAR - [x] create a function that passes the full dataset metadata as list of tibbles - [ ] build an automated DB...

We have a lot of code used for analyses in this repository. Drop all code from history to clean things up, also move analysis-related issues to another repository.

@multimeric if you don't terribly dislkie it, in the past it was useful for me to create a 10ish seconds GIF video about a package usage, it is a good...

- base (0.1): This is the first version - 0.1.5 - new metadata with the 0.1 cell_type_harmonised because the 0.2 had a bug - 0.2: - updated tissue classification -...

Converting makeflow workflow to a more mainstream workflow

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e.g. clusteR makesnake

integrate cell types and reclassify

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1) divide cells based on mcroclusters (e.g. B cells, CD8 T, monocytes). This is not always trivial, we have some high-confidence annotation, but some cells cannot be easily classified in...

Build Figure 3: query interface, framework pipeline, and technical benchmark

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The figure 3 of the manuscript https://docs.google.com/document/d/11zGOnMKONZzAEnfzmf-wriqWIvqAcPx3lpws4MSl20w/edit?usp=sharing will include - [ ] The flowchart of the backend process of querying and file organisation - [ ] The vignette of the...