Stefano Mangiola

refactor: convert magrittr %>% to base |> and ensure RHS calls use pa…

2

…rentheses; fix subset and validation piping edge cases; replace placeholder _ indexing; update tests and vignettes

Add unit tests for `get_x_y_annotation_columns` as a prerequisite for feature development.

This already happens for `edgeR`, with the backend method TREAT

Speed up writeH5AD

5

I handle a lot of data, HCA-scale. I would like a way to speed up the saving of large SCE. This could be achieved through low-level optimisation if possible, parallelization...

possibly speed up `save_object`

2

`save_object` is slow for big models (~10K parameters) ## Possible improvement 1 `qs2` is a very fast format for saving and reading data. For huge models, `fit$save_object()` is slow in...

allow reading and saving (`save_object()`) csv draws with DuckDB to avoid memory explosion

1

For large models (~13K paramemeters) the procedure ```r library(magrittr) temp_rds_file