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Published 20 hours ago • verified publisher icon soedinglab

align many unrelated sequences

Open RamilNurtdinov opened this issue 4 years ago • 1 comments

Hi. I made my personal small database of interest using "Building customized databases" tutorial. It was not obvious because of "cstranslate -b" that was poorly documented.

I want to query this database with many protein sequences. I got error: " 01:07:38.950 ERROR: sequences in stdin do not all have the same number of columns" Indeed, my query sequences are unrelated and have different length. They are many thousands. I tried '-M first' or '-M 50' with no success.

Can you tell me if I did something wrong? Or your program align one sequence or multiple alignment at once?

RamilNurtdinov avatar Apr 28 '20 23:04 RamilNurtdinov

Could you post the full script? Maybe something similar to https://github.com/soedinglab/hh-suite/issues/204#issuecomment-650781304 will also work for you?

milot-mirdita avatar Jun 28 '20 15:06 milot-mirdita