Steffen Neumann

It is always good to use/test with one of the files in msdata or mtbls2 packages for a cut&pastable example and to make sure it is not an issue with...

Hi, I can confirm the error occurring at https://github.com/DorresteinLaboratory/XCMS3_FeatureBasedMN/blob/master/XCMS3_Preprocessing_bacterial_samples.Rmd#L137 inside: ``` > traceback() 3: stop(gettextf("'arg' should be one of %s", paste(dQuote(choices), collapse = ", ")), domain = NA) 2: match.arg(return.type)...

Hi, I like the idea in general. I don't know examples from other packages, but would it make sense to wrap several calls as Scripts with `#!/usr/bin/Rscript` that look like...

Hi, as long as those scripts don't add any new big dependencies, I'd suggest to keep them in `xcms/inst/bin` unless we have examples on best practices from other packages. There...

Very good investigation so far! Now I need an object to run `chromTIC

Great, can reproduce locally: ``` Error in serialize(data, node$con, xdr = FALSE) : error writing to connection Calls: source ... -> .local -> .extractMultipleChromatograms Execution halted ``` on ``` >...

... and indeed no issue when running serial: ``` > register(SerialParam()) > ... > chromTIC ``` That's the first time I saw `TB` as unit for memory usage (albeit a...

Hi @melpetera , could you confirm that the original error was reported in W4M Ticket#2019030210000026 ? Because then it should be debugged on that infrastructure, since Windows brings in quite...

Hi, did you do a `retcor()` on that ? Can you check the graphic of that, to see whether the correction was overshooting ? Can you try without just to...

Hi, could you provide your `SessionInfo()` ? If you upgraded R, how did you upgrade the installed R packages, or did you install everything from fresh ? An inkling says...