Steffen Neumann

Document (minimum) required scope for PAT

3

While PATs will go away once #77 is fixed, the documentation https://github.com/marketplace/actions/github-pages-deploy#secrets says `You therefore have to create a custom Personal Access Token (PAT)` but when accessing https://github.com/settings/tokens/new I have...

Extend JCAMP-DX which also captures other measurement techniques.

2

Hi, with @cb2993 we are currently going through data formats in chemistry. JCAMP-DX can also be thought of as a container format, which has a header section and numerical data....

Helm chart for atmoz/sftp

9

Hi, related to #85, a helm chart allows for an even easier way to deploy `atmoz/sftp`. I would be able to help kick-starting this, but this requires a few people...

Add AWS IAM key id to Tags

1

Hi, in the AWS billing console you can filter resources by their tags. To get all costs incurred by some user, consider adding to https://github.com/kubenow/KubeNow/blob/master/aws/node/main.tf for everything that gets billed,...

Enhancement: Provide kn scp

4

Hi, I often need to copy files into a cluster. Having a `kn scp source dest` would be great, where `dest` gets replaced with `ubuntu@host:dest`. Yours, Steffen

Build error on macOS on BioC

21

Hi, we are currently getting on http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/merida1-buildsrc.html ``` --- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown Sizes of mz and intensity arrays don't match. Quitting from lines 103-106 (xcms-lcms-ms.Rmd) Error: processing vignette 'xcms-lcms-ms.Rmd'...

Build error and tons of "No data points ... Returning empty spectrum."

2

``` Loading required package: GenomeInfoDb Polarity can not be extracted from netCDF files, please set manually the polarity with the 'polarity' method. Warning in trimMz_Spectrum(object, mzlim = mz, msLevel. =...

Windows x64 (64-bit) error in MergeNeighboringPeaksParam

1

`xcms.Rcheck/tests_x64/testthat.Rout` Only on 64bit windows http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/tokay1-checksrc.html Let's keep an eye. Yours, Steffen ``` Object of class: MergeNeighboringPeaksParam Parameters: expandRt: 5 expandMz: 0.1 ppm: 20 minProp: 0.9 8.00 16.00 24.00 28.00...

Vignette Visual Gallery

2

Hi, it would be great to create a vignette collecting different ways of visualisation, so that xcms can create "paper ready" figures. Suggestions and code snippets welcome. See also the...