Steffen Neumann

Hi, what files do you get in `all_raw_files` ? What does your `pd` look like ? Yours, Steffen

Can you provide one of the problematic files ? If needed by private mail to me ? Yours, Steffen

Hi, you can see already from the file size (2MB vs 150MB) that there is some difference. The problematic file ends abruptly after 88 scans, resulting in a malformed XML:...

Hi, there is a `findROI()` function you can call with similar arguments as `findChromPeaks()`. The latter will drop all ROIs if they don't survive the wavelet detection. Yours, Steffen

Hi, the report here is a good start. Please report your versions from `sessionInfo()` and avoid cross posting in two issues #312. Code can be nicely formatted by enclosing in...

Hi, I can't reproduce that here, and it does work at the BioC build farm http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/ -> What is your operating system, which packages are you using ? Can you...

Inspirational code snippets also in https://github.com/schymane/ReSOLUTION/blob/master/R/plotMSMS.R although we'd want to avoid rCDK dependency in xcms. Bonus points if the generated images can be "injected" into our plotting function(s), so that...

In addition to the link @stanstrup gave in #243, there could be more snippets in in https://github.com/stanstrup/xcms_ggplot2 in general. Yours, Steffen

Hi @bouranij, I am afraid not, which was the reason we introduced `XCMSnExp` :-) maybe you could keep some mapping information between `xcmsSet` and `XCMSnExp` ? I could imagine that...

Hi @tentrillion , the abstract of the Patti paper says `The package includes example data and XCMS compatibility wrappers for ease of use` adn as said above, I'd guess @nathaniel-mahieu...