PlasFlow

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ImportError: libicuuc.so.58: cannot open shared object file: No such file or directory

4

I had install plasflow following the “Conda-based - recommended” by miniconda3. command： conda config --add channels bioconda conda config --add channels conda-forge conda create --name plasflow python=3.5 source activate plasflow...

lisa4109

filtering error

1

(plasflow) [administrator@localhost ~]$ ./miniconda3/envs/plasflow/bin/filter_sequences_by_length.pl -input Citrobacter_freundii_strain_CAV1321_scaffolds.fasta -output firstplas.fasta Can't locate Bio/SeqIO.pm in @INC (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at ./miniconda3/envs/plasflow/bin/filter_sequences_by_length.pl line 24. BEGIN failed--compilation aborted at...

feilongzh

conda installed tensorflow error

5

Hello, I installed the tool using conda, however, when I ran the tool, I got the error ImportError: /miniconda3/envs/plasflow/lib/python3.5/site-packages/google/protobuf/pyext/_message.cpython-35m-x86_64-linux-gnu.so: undefined symbol: _ZNK6google8protobuf10TextFormat17FieldValuePrinter9PrintBoolEb /miniconda3/envs/plasflow/lib/python3.5/site-packages/google/protobuf/pyext/_message.cpython-35m-x86_64-linux-gnu.so: undefined symbol: _ZNK6google8protobuf10TextFormat17FieldValuePrinter9PrintBoolEb Error importing tensorflow. Unless...

yzzhang68

New release: fix discrepancy between pypi, release, and git

2

I'm currently trying to fix the bioconda recipe for plasflow: https://github.com/bioconda/bioconda-recipes/pull/27766 I noticed that the content of the download available at pypi and the release on github seems to differ....

bernt-matthias

Error in filter_sequences_by_length.pl

2

When I run the command ‘perl filter_sequences_by_length.pl -input /data/Timmy/metagenome_test/ERR1051325.fa -output /data/Timmy/plasflow/filtered_ERR1051325.fa -thresh sequence_length_threshold’ Error: “(plasflow) [wangbh@tc6000 Plasflow]$ perl filter_sequences_by_length.pl -input /data/Timmy/metagenome_test/ERR1051325.fa -output /data/Timmy/plasflow/filtered_ERR1051325.fa -thresh sequence_length_threshold Can't locate Bio/SeqIO.pm in @INC...

Timmywang1

Should MAG completeness be considered when running Plasflow?

1

Hi there, I've been applying Plasflow to MAGs from waste water treatment samples, and it seems to be working really well! My question is more theoretical than technical - given...

Riselya

conda install hung at solving environment...

2

Hi, I used Conda-based installation, and all the steps were done successfully, expect he last step "conda install plasflow -c smaegol", which output: ``` Collecting package metadata: done Solving environment:...

Xiaohui-Z

Archaea sequences?

2

Great tool. I read that you are planning to include Archaea sequences. Do you have an idea of when will the tool be updated?

DianaKarina

Hi, I try to run your tool by following your instructions, using Conda, and every time I have the same issue : ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by...

Arzhura

Running error with "__init__.py"

2

Hi, I installed PlasFlow through anaconda with the command line: **conda create -n plasflow python=3.5 plasflow** Then I ran plasflow.py but then I got the following errors: > Calculating kmer...

Handymanalan