PlasFlow
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smaegol
Software for prediction of plasmid sequences in metagenomic assemblies
Maybe an issue with numpy version. I have `v1.11.3` ``` $ PlasFlow.py --input scaff1k.fa --output scaff.plasflow.csv --threshold 0.7 ... Traceback (most recent call last): File "/home/dcdanko/miniconda3/envs/plasflow/bin/PlasFlow.py", line 346, in vote_proba...
A colleague is working on using plasflow to analyze on all contigs >1000 bp in her dataset. After filtering using `filter_sequences_by_length.pl`, she has a total of 2,964,210 contigs. We are...
Viruses?
Hello, I did some test runs with the software, and I noticed that it could not discriminate between prokaryotic and viral sequences. As a result, it often classifies viral sequences...
When I followed the steps,the result was: [41372:0715/180616.696:ERROR:cache_util_win.cc(20)] Unable to move the cache: access denied。 (0x5) [41372:0715/180616.696:ERROR:disk_cache.cc(205)] Unable to create cache How can I deal with it?
hi~Can I ask you some questions? When I code as you wrote: PlasFlow.py --input Citrobacter_freundii_strain_CAV1321_scaffolds.fasta --output test.plasflow_predictions.tsv --threshold 0.7 The conda tips me that it's not a effective directive。How can...