PlasFlow
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smaegol
ImportError: libicuuc.so.58: cannot open shared object file: No such file or directory
I had install plasflow following the “Conda-based - recommended” by miniconda3. command： conda config --add channels bioconda conda config --add channels conda-forge conda create --name plasflow python=3.5 source activate plasflow conda install -c jjhelmus tensorflow=0.10.0rc0 conda install plasflow -c smaegol
after all of the dependencies being installed, run ~/biosoft/miniconda3/envs/plasflow/bin/PlasFlow.py --input plasflow.test.fa --output W3
then, the erro occured like this:
Traceback (most recent call last): File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/bin/PlasFlow.py", line 50, in <module> from rpy2.robjects.packages import importr File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/lib/python3.5/site-packages/rpy2/robjects/__init__.py", line 16, in <module> import rpy2.rinterface as rinterface File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/lib/python3.5/site-packages/rpy2/rinterface/__init__.py", line 92, in <module> from rpy2.rinterface._rinterface import (baseenv, ImportError: libicuuc.so.58: cannot open shared object file: No such file or directory
I had install plasflow following the “Conda-based - recommended” by miniconda3. command： conda config --add channels bioconda conda config --add channels conda-forge conda create --name plasflow python=3.5 source activate plasflow conda install -c jjhelmus tensorflow=0.10.0rc0 conda install plasflow -c smaegol
after all of the dependencies being installed, run ~/biosoft/miniconda3/envs/plasflow/bin/PlasFlow.py --input plasflow.test.fa --output W3
then, the erro occured like this:
Traceback (most recent call last): File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/bin/PlasFlow.py", line 50, in <module> from rpy2.robjects.packages import importr File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/lib/python3.5/site-packages/rpy2/robjects/__init__.py", line 16, in <module> import rpy2.rinterface as rinterface File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/lib/python3.5/site-packages/rpy2/rinterface/__init__.py", line 92, in <module> from rpy2.rinterface._rinterface import (baseenv, ImportError: libicuuc.so.58: cannot open shared object file: No such file or directory
I have the same question.
if you have the problem like this, the lack of libicuuc.so.58 is the reason, you could build soft link;
command: (if you use conda to download this software!)
cd /usr/anaconda/envs/plasflow_master/lib
ln -s /usr/anaconda/lib/libicuuc.so.58 libicuuc.so.58
ln -s /usr/anaconda/lib/libicui18n.so.58 libicui18n.so.58
ln -s /usr/anaconda/lib/libicudata.so.58 libicudata.so.58
then, run again,you will find it is OK !
hope to help you ~~~
Traceback (most recent call last): File "/usr/lishasha/biosoft/miniconda3/envs/plasflow/bin/PlasFlow.py", line 50, in
ImportError: libicuuc.so.58: cannot open shared object file: No such file or directory ImportError: libicui18n.so.58: cannot open shared object file: No such file or directory ImportError: libicudata.so.58: cannot open shared object file: No such file or directory
I have met similar problem ,how can I could solve it ?
Traceback (most recent call last):
File "/home/meta/miniconda3/envs/plasflow/bin/PlasFlow.py", line 50, in
