Shaun Jackman
Shaun Jackman
``` + su -c brew update linuxbrew bash: brew: command not found ``` https://www.singularity-hub.org/containers/3403/log See if you're able to remove `su` from this command, and instead set up the permissions...
> Brew can't be run as sudo (due to error above) which is why it's ran as linuxbrew user: Ah, got it. Can the whole script be run as the...
Excellent find with the bioBakery Singularity file! That's a very useful resource. `su -c '…' linuxbrew` is fine. I misunderstood what was going on. Putting the option at the end...
That's excellent progress! Thanks, Susie. Can you try making a version of https://github.com/bcgsc/orca/blob/master/scripts/orca that uses Singularity rather than Docker? Once you're happy with the image, we'll need to move it...
Excellent. Thanks, Susie! The current build on Singularity Hub says that it has been running since Tue Aug 28 (one full week). So I'm guessing that something is not quite...
@tmozgach Could you please review this checklist and tick off the complete items? What blockers remain before releasing the next version of ORCA?
That list is shorter than I thought it might be. That's a good thing. We can build bottles for these formulae if we remove their package dependencies and instead vendor...
Hi, Chris. Can you please report the output of… ``` brew update brew install perl cpanm cpanm PerlIO::gzip perl -e 'use PerlIO::gzip' ```
Yes, I have MAKER installed at the GSC using Linuxbrew. Can you use `gcc` rather than `[email protected]`?
Please report the output of… ```sh brew install discovardenovo brew gist-logs discovardenovo ```