Shaun Jackman

Use a tag scheme of `"#{version}_#{revision}-#{rebuild}.#{bottle_tag}"`

aligner: Add SAM output format

2

Consider adding SAM output format to the `aligner` program

Bandage AppImage/AppDir requires the shared libraries libGL.so.1, libfontconfig.so.1, and libfreetype.so.6

5

Bandage requires the shared libraries `libGL.so.1`, `libfontconfig.so.1`, and `libfreetype.so.6`, which are not included in the AppDir. These libraries can be installed using [Homebrew on Linux](https://brew.sh) or `apt-get`. ```console $ brew...

Merge all possible nodes from command line [feature request]

2

It'd be fantastic to be able to run `Merge all possible nodes` from the command line and write the result to a new GFA file.

Filtering by depth of coverage with `--mindepth --maxdepth` is very useful. I'd love to be able to simultaneously filter by the length of the contig with `--minlength --maxlength`.

I believe currently only FASTA format is supported.

Save an interactive graph layout to disk [feature request]

2

I'd like to be able to save an interactive graph layout to disk, so that I can open it in Bandage and resume from where I left off. The file...

The graph contains no nodes that can be merged

3

I'm seeing this error `The graph contains no nodes that can be merged` with a graph that should have merge-able nodes. I've used this feature before. I'm not sure where...

image: Specify random seed value [feature request]

2

I'd like to specify the random seed value for `Bandage image`, so that I can reproducibly get the same image for a given graph. For example, if I create both...

Double-click a GFA file to open it [macOS]

2

I associated the GFA file type with Bandage.app. I double clicked a GFA file. Bandage opens, but the selected graph is not loaded. I suspect this is because the `Bandage.app/Contents/MacOS/Bandage`...