Shaun Jackman
Shaun Jackman
Yes, `--enable-maxk=512` will use 16 times the memory as `--enable-maxk=32`.
I had asked @kokyriakidis to report the output of ntCard to predict the memory usage of ABySS. ``` F0 3094977367 ``` There are three billion distinct *k*-mers. The memory usage...
@kmnip ? My guess is that it uses the version of ABySS found first in the `PATH` environment variable.
Note that the container does not have to be running. We can stop the container when the user logs out. It's possible, for example, to use `docker commit` to save...
Ah, you can also use ``` docker export CONTAINER | ssh new_host docker import - ``` https://stackoverflow.com/a/28751780/423153
That's one possible use case, but not the one that I'm thinking of. The use case is when a user `ssh` to ORCA, being able to move their container to...
That's quite cool! Keep in mind though that we don't need to migrate a running container, only a stopped one. That should be much simpler, and should be possible using...
The data volumes will be mounted on a network file system, so don't need to be migrated between machines.
Plan to migrate a stopped container: `docker export` serializes a stopped container. `docker import` imports a serialized container. As an experiment, can you try… `docker run` to create a stopped...
If Option 5 multi-host persistence works over NFS, that may be the simplest solution. I'd like to know whether there's a tool to automate Option 3 export and import. At...