orca
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Singularity build
shub:bcgsc/orca shub:suujia/orca
Not sure how to trigger a rebuild for the bcgsc/orca shub. The error message I got with a build on suujia/orca shub was:
+ su -c brew install perl -v linuxbrew
Error: /home/linuxbrew/.linuxbrew/Homebrew is not writable. You should change the
ownership and permissions of /home/linuxbrew/.linuxbrew/Homebrew back to your
user account:
sudo chown -R $(whoami) /home/linuxbrew/.linuxbrew/Homebrew
Error: Cannot write to /home/linuxbrew/.linuxbrew
ABORT: Aborting with RETVAL=255
I think I'll start with getting it to build locally first and updating singularity file to align with orca dockerfile.