Shaun Jackman
Shaun Jackman
`pip3 install biopython` is failing as well, and we can't remove `biopython` from ORCA. `pip2 install biopython` did however succeed. https://hub.docker.com/r/bcgsc/orca-1/builds/bwhqkj3gdt2w8rwhrmmbhug/ Could you please look into this build failure?
Nice find!
I prefer `pip3 install htseq` if it works, otherwise `pip2 install htseq` is fine.
simon-anders/htseq#60 indicates Python 3.5 does not work, Python 3.6 does work, but doesn't mention Python 3.7.
> sga works in empty image =>something influences on it What's the error message? Please report `brew gist-logs sga`
> mummer works in empty image =>something influences on it That's the version of `perl` I believe. It doesn't like newer versions of Perl.
> poretools works in empty image =>something influences on it The error message is from `h5py`. See if you can get a more helpful and verbose error message from `brew...
`discovar` shouldn't need a fix. Is `brew test discovar` failing? What's the error message?
Oh, you mean `brew install discovar` is failing. In that case, add ```ruby depends_on "[email protected]" => :build ```
No need to bump the revision for `discovar`. `brew install discovar` should use the bottle and should succeed. What command is failing, and what is the error message?