Ryan Ly

Results 455 comments of Ryan Ly

Related: https://github.com/NeurodataWithoutBorders/pynwb/pull/1282 > pandas DataFrame is used as the main format for returning results from tables Yes, that would make it difficult. If you slice a set of rows from...

I see. I am curious - what does the `dandi` client need from pynwb? Just validation?

Thanks. We discussed this at our developer meeting today and all lean toward keeping `pandas` as part of the default installation because it is required for accessing and manipulating table...

What would be the meaning/relevance of the linked `TimeSeries`? Can you give an example where neither the EventsTable nor the TimeIntervals table would be appropriate? Maybe if the camera was...

@h-mayorquin can you please create a PR to clarify the doc? We want to discourage the use of ImageSeries, and encourage the use of Images.

Looking through the code with @lavanv1107 , I suspect that, even in locally exclusive mode, when the signals from multiple neighboring channels cross the threshold at the same time, they...

See comments in https://github.com/NeurodataWithoutBorders/pynwb/blob/387f80bd621d4e33a72abc177122c72c546c4321/src/pynwb/ophys.py#L134-L146 This will be fixed in PyNWB 4.0 when positional arguments are no longer allowed for `ImagingPlane.__init__`.

@oruebel That should be possible but I'm not sure how that would work with DataChunkIterators which will not have been written yet. Also before writing, the data would be in...

Good idea. Scanning the first 199 dandisets with NWB data (with h5tojson), I found five with a value for "protocol": ``` {'dandi_json/000045/sub-00778394-c956-408d-8a6c-ca3b05a611d5/sub-00778394-c956-408d-8a6c-ca3b05a611d5_ses-07497983-2229-4cb2-8a45-50cee3fe9089_behavior+image.nwb.json': '_iblrig_tasks_trainingChoiceWorld5.2.7', 'dandi_json/000149/sub-92130c1b-4fdb-4acc-86e0-1853d429c41a/sub-92130c1b-4fdb-4acc-86e0-1853d429c41a_ses-c7bd79c9-c47e-4ea5-aea3-74dda991b48e_behavior+ecephys+image.nwb.json': '_iblrig_tasks_ephysChoiceWorld6.4.2', 'dandi_json/000221/sub-HI215/sub-HI215_ses-HI215-071019_ecephys+ogen.nwb.json': 'IACUC', 'dandi_json/000409/sub-PL015/sub-PL015_ses-1d4a7bd6-296a-48b9-b20e-bd0ac80750a5_behavior+ecephys+image.nwb.json': '_iblrig_tasks_ephysChoiceWorld6.6.1', 'dandi_json/000572/sub-BAYLORNL23/sub-BAYLORNL23_ses-20190225_ecephys+ogen.nwb.json':...

Thank you @stephprince . This looks great to me. Please approve.