Ryan Ly
Ryan Ly
This is proving to be tricky to get right in PyNWB, so I think we should punt this change to the next release.
As discussed, I opened https://github.com/hdmf-dev/hdmf-schema-language/issues/47 to address this.
Related: https://github.com/NeurodataWithoutBorders/nwb-schema/issues/592
Loading the pynwb module is pretty slow at the moment. A lot of time is currently spent parsing the yaml schema files. @ajtritt has looked into ways of pickling the...
Actually, never mind. I see that you are timing just the file reading part of your sample code. Reading the file involves building all of the classes and objects behind...
> > nice to have a feature that reads a single attribute or dataset from an NWB > > I think for PyNWB it may make more sense to stick...
@alessandratrapani I think that would be a good solution, but I have one suggestion - it is more conventional to use a single ragged `DynamicTableRegion` instead of a column with...
```python # 2 electrodes x 3 trials x 5 samples imported_trialized_data = np.array((((1,2,3,4,5), (2,3,4,5,6), (1,5,10,12,14)), ((10,20,30,40,50), (20,30,40,50,60), (10,50,100,120,140)))) # for the case of a fixed sampling rate: trial_start_times = np.array((2.1,...
A couple of the hackathon participants were lamenting the fact that they had to untrialize their data, which is an error-prone process, only for NWB to re-trialize their data for...
Yeah, it's not a priority, and certainly we want to encourage people to input all of their data into NWB, including outside trial boundaries. This just came to mind when...