Ryan Ly
Ryan Ly
@luiztauffer Could you please post **the exact steps** that you used to create the environment where the h5py ROS3 driver installation failed? I can try to debug a bit. If...
@oruebel what do you think about also extracting most of the code in `__main__` in `src/pynwb/validate.py` to a function that takes as inputs the arguments passed into the CLI function....
> Pointed out some minor coding improvements. Thanks, @jwodder !
@weiglszonja This code stores images in an ImageSeries so that they can be referenced by IndexSeries: https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/docs/gallery/domain/brain_observatory.py#L71-L85 This approach is no longer the recommended approach. Instead, use the `Images` and...
Hi @vilim , In your `ndx-zebrafish.namespace.yaml` file, you have written that `ZebrafishBehavior` is a neurodata type to include from the NWB `core` namespace. However, this is a type that you...
In your fork, can you run `git tag -l` and paste it here? If 2.1.0 is not the third from the bottom, then please try `git fetch --tags upstream` (replace...
Looking at `epoch_tags` with a closer eye, I do not fully understand why this instance variable exists and whether it works as intended. As far as I can tell, `epoch_tags`...
OK. Good to know, thanks. In `NWBFile.__init__`: https://github.com/NeurodataWithoutBorders/pynwb/blob/d75cc825fe4aaeae18feeac3cbcb3f70651a4c09/src/pynwb/file.py#L317-L318 `epoch_tags` is allowed to be a tuple or list, but as you mention, the code expects a set, so at the very...
You can use this syntax: ```python nwb.processing['ecephys']['LFP']['lfp'].electrodes[:, 'group_name'] ``` You can also use `DynamicTableRegion.table` to get the target table: ```python nwb.processing['ecephys']['LFP']['lfp'].electrodes.table['group_name'][:] ``` We can add the suggested enhancement in HDMF...
Thank you @jonahpearl . This a great idea. Many of the `add_x` (and `create_x`) functions come from `hdmf.container.MultiContainerInterface`: https://github.com/hdmf-dev/hdmf/blob/dev/src/hdmf/container.py#L730 https://github.com/hdmf-dev/hdmf/blob/dev/src/hdmf/container.py#L761 It would be great if you could submit a pull...