Ryan Ly

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icon location Neuroscience research software engineer. Technical lead of the NWB data standard and software for neurophysiology.

Results 455 comments of Ryan Ly

Problem in entering "Bruker TIFF Imaging(single Channel, Single Plane)" data

Hi @faezehrabbani97 , thanks for the bug report, and sorry for the delay in response. What are contents of your data directory `C:\Users\faezeh.rabbani\DATA\TSeries-03182024-fod-screen-914-001`? Would it be possible for you to...

Support photometry data

That all makes sense. Thanks!

Improve docs around waveforms

cc @khl02007

Should the units of `OptogeneticSeries` be watts per unit of area instead of just watts?

I think it is fine to make the units flexible.

improve doc of `IndexSeries`

This is great. Thank you @h-mayorquin

Port SpikeInterface update for tutorial generation

DevTests pass but tutorial data generation is failing due to ``` Traceback (most recent call last): File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask/app.py", line 1484, in full_dispatch_request rv = self.dispatch_request() File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask/app.py", line 1469, in...

Port SpikeInterface update for tutorial generation

Tracking updates here. I updated neuroconv to 0.6.0 instead of the latest to make upgrading neuroconv here more manageable. 0.6.0 was the next release of neuroconv after the currently pinned...

Port SpikeInterface update for tutorial generation

I resolved the incompatibility between hdf5 libs used by h5py and tables. The issues related to supporting neuroconv 0.6.0 beyond the spikeinterface update will be resolved in a separate PR....

Converting sorting file only results in error

This is a duplicate of #909

Converting sorting file only results in error

I am reopening this issue and updating the OP to reflect the broader problem that a conversion with only Phy data fails with the same error, so this seems to...