Ray Stefancsik
Ray Stefancsik
The 'response to' 'chemical' type traits have been incorporated in OBA. See the [table here.]( https://github.com/geneontology/go-ontology/issues/22210#issuecomment-1398565968) I am keeping this ticket open, because there are some GO terms mentioned https://github.com/geneontology/go-ontology/issues/22210...
> I am not opposed to this just note that there is quite some weird resistance on the subject of wether "amount of gene expression" is really a trait in...
The FOVT examples I checked imply length qualities along an anatomical *axis* from anatomical entity A to anatomical enity B. The measurement seems to be along a line in the...
Taking inspiration from uPheno pattern `abnormalDistanceBetweenAnatomicalEntities.yaml`, I have modified my model to: ```yaml vars: bone: 'bone element' from: 'anatomical entity' to: 'anatomical entity' logical_axioms: axiom_type: subClassOf text: "length and (...
Hi @ar-ibrahim , If you would like to get involved in the LOINC-OBA mapping project, please pick some terms to curate from the [linked gsheet table](https://docs.google.com/spreadsheets/d/137UWJXVtqcX8Td-_iBu92hxEVSD9aPjSwhcSKJsNbSg/edit?usp=sharing) and add your name...
> @rays22 why is this failing? There had been some syntax errors (missing quotes) in your yaml file. I have fixed them in commit .
I am doing 'sleep' related traits in [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv) in #209: subject_id | subject_label | match_type | quality | quality_label | attribute | attribute_label -- | -- | -- | --...
I am curating these 344: subject_id | EFO label -- | -- EFO:0007697 | left superior temporal gyrus grey matter volume measurement EFO:0009202 | Reticulocyte Mean Corpuscular Hemoglobin Measurement EFO:0009204...
@ar-ibrahim , please - [x] Add a table with these new EFO id -OBA id mappings in a comment for this ticket. - [x] Add the same new EFO-OBA mappings...
I have added 39 mapped EFO-OBA pairs to the [sssom gsheet.](https://docs.google.com/spreadsheets/d/13qh7dLE38vMyz91oRqj6GzKjFohNazNKAJxKG6Plw1o/edit#gid=1005741851) I did not add the `EFO:0004532 serum gamma-glutamyl transferase measurement OBA:2050081` pair, because it does not look like a...