bio-attribute-ontology
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obophenotype
EFO-OBA Mapping
- linked to issue #162
- filtered (by attribute label) terms from unreviewed EFO-OBA mappings list
- will map the following terms:
| subject_id | subject_match_field | subject_label | match_type | quality | quality_label | attribute | attribute_label |
|---|---|---|---|---|---|---|---|
| EFO:0007579 | rdfs:label | blood chromium quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0006332 | rdfs:label | serum iron quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005421 | rdfs:label | serum homoarginine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007947 | rdfs:label | serum galactose-deficient iga1 quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005247 | rdfs:label | anti-helicobacter pylori serum igg quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005266 | rdfs:label | serum selenium quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005418 | rdfs:label | serum dimethylarginine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007581 | rdfs:label | blood manganese quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0004735 | rdfs:label | serum alanine aminotransferase quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007575 | rdfs:label | blood aluminium quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0007583 | rdfs:label | blood nickel quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0009795 | rdfs:label | serum urea quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007582 | rdfs:label | blood molybdenum quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0007576 | rdfs:label | blood cadmium quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0004535 | rdfs:label | serum albumin quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005849 | rdfs:label | serum lipase activity quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004728 | rdfs:label | serum amyloid a protein quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004993 | rdfs:label | serum igm quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004568 | rdfs:label | serum non-albumin protein quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007584 | rdfs:label | blood zinc quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0005139 | rdfs:label | serum ceruloplasmin quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004912 | rdfs:label | serum iga quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0020736 | rdfs:label | serum paraoxonase/arylesterase 1 quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005415 | rdfs:label | serum alpha-1-antitrypsin quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005268 | rdfs:label | serum zinc quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007577 | rdfs:label | blood cobalt quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0005664 | rdfs:label | blood metabolite quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0010127 | rdfs:label | serum immunoglobulin quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0006795 | rdfs:label | serum vegfr2 concentration quality | Lexical | PATO:0000033 | concentration | UBERON:0001977 | serum |
| EFO:0004532 | rdfs:label | serum gamma-glutamyl transferase quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0005416 | rdfs:label | serum st2 quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0008282 | rdfs:label | serum amyloid a-1 protein quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004579 | rdfs:label | serum ige quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0004565 | rdfs:label | serum igg quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0600041 | rdfs:label | serum clozapine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007040 | rdfs:label | blood lead quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0007580 | rdfs:label | blood mercury quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0004504 | rdfs:label | serum hepcidin quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0008283 | rdfs:label | serum amyloid p-component quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0007574 | rdfs:label | blood toxic metal quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0005653 | rdfs:label | serum metabolite quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0600043 | rdfs:label | serum n-desmethylclozapine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0011012 | oboInOwl:hasExactSynonym | blood sodium bicarbonate quality | Lexical | PATO:0000001 | quality | UBERON:0000178 | blood |
| EFO:0004912 | oboInOwl:hasExactSynonym | serum immunoglobulin a quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0010972 | oboInOwl:hasExactSynonym | serum inorganic phosphate concentration | Lexical | PATO:0000033 | concentration | UBERON:0001977 | serum |
| EFO:0010972 | oboInOwl:hasExactSynonym | serum inorganic phosphate concentration | Lexical | PATO:0000033 | concentration | UBERON:0001977 | serum |
| EFO:0005415 | oboInOwl:hasExactSynonym | serum aat quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0010952 | oboInOwl:hasExactSynonym | urine potassium quality | Lexical | PATO:0000001 | quality | UBERON:0001088 | urine |
| EFO:0004518 | oboInOwl:hasExactSynonym | serum creatinine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
| EFO:0600043 | oboInOwl:hasExactSynonym | serum norclozapine quality | Lexical | PATO:0000001 | quality | UBERON:0001977 | serum |
@ar-ibrahim , please
- [x] Add a table with these new EFO id -OBA id mappings in a comment for this ticket.
- [x] Add the same new EFO-OBA mappings to sssom table (gsheet)
I have added 39 mapped EFO-OBA pairs to the sssom gsheet.
I did not add the
EFO:0004532 serum gamma-glutamyl transferase measurement OBA:2050081
pair, because it does not look like a correct match to me, because the GO:1990234 transferase complex does not have serum gamma-glutamyl transferase subunit. Actually, the serum gamma-glutamyl transferase measurement is just an artificial assay of the activity of one or more unspecified enzymes in the serum (most likely released there from the liver): 'An aminopeptidase activity which cleaves the chromogenic substrate gamma-glutamyl-4-methoxy-beta-naphthylamide' .
| subject_id | subject_label | subject_category | predicate_id | object_id |
|---|---|---|---|---|
| EFO:0004568 | serum non-albumin protein measurement | measurement | skos:broadMatch | OBA:2050071 |
| EFO:0007574 | blood toxic metal measurement | measurement | skos:broadMatch | OBA:2050091 |
| EFO:0007947 | serum galactose-deficient IgA1 measurement | measurement | skos:broadMatch | OBA:2050057 |
| EFO:0004504 | serum hepcidin measurement | measurement | skos:exactMatch | OBA:2050089 |
| EFO:0004518 | creatinine measurement | measurement | skos:exactMatch | OBA:2050096 |
| EFO:0004535 | serum albumin measurement | measurement | skos:exactMatch | OBA:2050068 |
| EFO:0004565 | serum IgG measurement | measurement | skos:exactMatch | OBA:2050085 |
| EFO:0004579 | serum IgE measurement | measurement | skos:exactMatch | OBA:2050084 |
| EFO:0004728 | serum amyloid A protein measurement | measurement | skos:exactMatch | OBA:2050097 |
| EFO:0004912 | serum IgA measurement | measurement | skos:exactMatch | OBA:2050074 |
| EFO:0004993 | serum IgM measurement | measurement | skos:exactMatch | OBA:2050070 |
| EFO:0005139 | serum ceruloplasmin measurement | measurement | skos:exactMatch | OBA:2050073 |
| EFO:0005266 | serum selenium measurement | measurement | skos:exactMatch | OBA:2050059 |
| EFO:0005268 | serum zinc measurement | measurement | skos:exactMatch | OBA:2050076 |
| EFO:0005415 | serum alpha-1-antitrypsin measurement | measurement | skos:exactMatch | OBA:2050075 |
| EFO:0005416 | serum ST2 measurement | measurement | skos:exactMatch | OBA:2050082 |
| EFO:0005418 | serum dimethylarginine measurement | measurement | skos:exactMatch | OBA:2050060 |
| EFO:0005421 | serum homoarginine measurement | measurement | skos:exactMatch | OBA:2050056 |
| EFO:0006332 | serum iron measurement | measurement | skos:exactMatch | OBA:2050055 |
| EFO:0006795 | serum VEGFR2 concentration measurement | measurement | skos:exactMatch | OBA:2050080 |
| EFO:0007040 | blood lead measurement | measurement | skos:exactMatch | OBA:2050087 |
| EFO:0007575 | blood aluminium measurement | measurement | skos:exactMatch | OBA:2050063 |
| EFO:0007576 | blood cadmium measurement | measurement | skos:exactMatch | OBA:2050067 |
| EFO:0007577 | blood cobalt measurement | measurement | skos:exactMatch | OBA:2050077 |
| EFO:0007579 | blood chromium measurement | measurement | skos:exactMatch | OBA:2050054 |
| EFO:0007580 | blood mercury measurement | measurement | skos:exactMatch | OBA:2050088 |
| EFO:0007581 | blood manganese measurement | measurement | skos:exactMatch | OBA:2050061 |
| EFO:0007582 | blood molybdenum measurement | measurement | skos:exactMatch | OBA:2050066 |
| EFO:0007583 | blood nickel measurement | measurement | skos:exactMatch | OBA:2050064 |
| EFO:0007584 | blood zinc measurement | measurement | skos:exactMatch | OBA:2050072 |
| EFO:0008282 | serum amyloid A-1 protein measurement | measurement | skos:exactMatch | OBA:2050083 |
| EFO:0008283 | serum amyloid P-component measurement | measurement | skos:exactMatch | OBA:2050090 |
| EFO:0009795 | serum urea measurement | measurement | skos:exactMatch | OBA:2050065 |
| EFO:0010127 | serum immunoglobulin measurement | measurement | skos:exactMatch | OBA:2050079 |
| EFO:0010952 | urinary potassium measurement | measurement | skos:exactMatch | OBA:2050095 |
| EFO:0011012 | blood bicarbonate measurement | measurement | skos:exactMatch | OBA:2050094 |
| EFO:0020736 | serum paraoxonase/arylesterase 1 measurement | measurement | skos:exactMatch | OBA:2050098 |
| EFO:0600041 | serum clozapine measurement | measurement | skos:exactMatch | OBA:2050086 |
| EFO:0600043 | serum N-desmethylclozapine measurement | measurement | skos:exactMatch | OBA:2050093 |
These mappings seem super relevant, thanks for doing these! We should add the remaining chemical X level traits after the paper is finished. If you merge these additions in, I can count them for the paper analysis.
