Ray Stefancsik

See discussion here: https://github.com/obophenotype/upheno/pull/851/files#r955128848 Modify definition to mean [separation into constituent layers](https://www.merriam-webster.com/dictionary/delamination).

- [ ] need a report of usage of [mislocalised PATO:0000628](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0000628) A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. [dislocated PATO:0001852](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001852) A...

> 2022-08-25 08:19:03.700Z error [] [context: command=generate;pattern=../patterns/dosdp-patterns/cellPartOfAnatomicalEntity.yaml;input=../patterns/data/default//cellPartOfAnatomicalEntity.tsv;output=../patterns/data/default/cellPartOfAnatomicalEntity.ofn] JSON does not conform to DOS-DP schema for pattern file at ../patterns/dosdp-patterns/cellPartOfAnatomicalEntity.yaml: String: DownField(xrefs),DownField(def) > 2022-08-25 08:19:03.710Z error [] [context: ] JSON does...

> Not sure what needs to be done here... I tried to close this PR, but unclear to me what the background is as there is no linked issue. I...

Suggestions from [Phenotype Ontology Working Group meetings](https://docs.google.com/document/d/1WrQanAMuccS-oaoAIb9yWQAd4Rvy3R3mU01v9wHbriM/edit#): * Keep only one of the two when there is a pair of related terms/patterns. Keep the name. 1. characteristic of part of...

How about changing the names for now as a pragmatic solution and postpone implementing the [more complication solution suggested above](https://github.com/obophenotype/upheno/issues/872#issuecomment-1270400345) for the future? My proposed [abnormalMorphologyOfPartOfAnatomicalEntity.yaml](https://github.com/obophenotype/upheno/blob/master/src/patterns/dosdp-dev/abnormalMorphologyOfPartOfAnatomicalEntity.yaml) naming scheme is this:...

Need to figure out how we handle obsolete patterns in case anyone is using these. Include in the SOP some information for what to do.Also look into using uPheno to...

### 2022-06-22 Wednesday #### Since last Wednesday * First steps for EFO/VT alignment [#101](https://github.com/obophenotype/bio-attribute-ontology/issues/101) - Ran EFO(GWAS)-VT-OBA trait alignment pipeline and reviewed the produced EFO-OBA and VT-OBA pattern matches -...

#### Since last Wednesday * Updated some VT-OBA mapping tables [#106](https://github.com/obophenotype/bio-attribute-ontology/pull/106) * Completed fix for [Remove CHEBI role classes that cause logical errors in OBA obophenotype/human-phenotype-ontology#99](https://github.com/obophenotype/bio-attribute-ontology/pull/99) in PR [OBA obophenotype/human-phenotype-ontology#99](https://github.com/obophenotype/bio-attribute-ontology/pull/99)...

## 2022-07-06. #### Since last Wednesday * Resolving remaining tasks with [New 'trait in response' pattern involving CHEBI roles obophenotype/human-phenotype-ontology#96](https://github.com/obophenotype/bio-attribute-ontology/issues/96) * Preparations for uPheno curation call. * Reviewed [CL PR...