Ray Stefancsik

### 2023-02-01 Wednesday * Finalised [OBA manuscript](https://docs.google.com/document/d/1V5MPdnB3kQiTTcL_wj1mnTzjZbK3khtfiuXfKlpvQuk/) * Preprint published on [bioRxiv](https://www.biorxiv.org/content/10.1101/2023.01.26.525742v1) * Reviewed [IMPC related attributes for OBA PR obophenotype/human-phenotype-ontology#192](https://github.com/obophenotype/bio-attribute-ontology/pull/192) and * Fixed [unsatisfiable classes in OBA](https://github.com/obophenotype/bio-attribute-ontology/issues/186) by refreshing...

### 2023-02-08 #### Since last Wednesday * Reviewed OBA [PR obophenotype/human-phenotype-ontology#207](https://github.com/obophenotype/bio-attribute-ontology/pull/207) related to a new GWAS/EFO term request. * Helped MP fix duplicate EQs in [PR obophenotype/human-phenotype-ontology#3712](https://github.com/mgijax/mammalian-phenotype-ontology/pull/3712) and [PR obophenotype/human-phenotype-ontology#3713](https://github.com/mgijax/mammalian-phenotype-ontology/pull/3713)...

### 2023-02-15 #### Since last Wednesday * OBA issue: [Added some CPATH related OBA traits](https://github.com/obophenotype/bio-attribute-ontology/issues/191) * Reviewed OBA [PR obophenotype/human-phenotype-ontology#214 and fixed QC errors: morphology and related traits](https://github.com/obophenotype/bio-attribute-ontology/pull/214) * Reviewed...

I can confirm that the examples in the two 'abnormal molecular function' templates do not actually fit the EQs and thus are incorrect. As you point out, none of these...

@pnrobinson, I think the outcome is a consensus on the suggestion to change the logical definitions of [Abnormal cardiac atrium morphology](http://purl.obolibrary.org/obo/HP_0005120) and [Abnormal heart valve morphology](http://purl.obolibrary.org/obo/HP_0001654) to: ``` has part...

> just so we are cleare 'inheres in part of' is actually now 'characterstic of part of' Yes, the current label for `inheres in part of` is [`characteristic of part...

> @rays22 it would be good to start to have English language definitions of all of the patterns, but that is outside of my wheelhouse (the yaml files are only...

> I added, provisionally, the two properties chains to `develops_from` in the base branch, and this is the new diff. > > # Ontology comparison > ## Left > *...

[Here is an UberGraph query](https://api.triplydb.com/s/FKY7KeMXD) to get the EFO terms that are subclasses of * GO:0042221 ; # "response to chemical" * GO:0050896 ; # "response to stimulus" Feel free...

First draft of EFO/GO --> OBA mapping: https://docs.google.com/spreadsheets/d/13qh7dLE38vMyz91oRqj6GzKjFohNazNKAJxKG6Plw1o/edit#gid=1861483396