EDTA
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oushujun
Extensive de-novo TE Annotator
Hi, I have annotated my genomes by using the panEDTA pipeline, and now I have to add some new genomes. I am curious about that should I overwrite the previous...
Hi everyone， Do I need to call EDTA's conda environment when running panEDTA? conda activate EDTA Thanks very much
hi, shujun Thank you for developing this tool ! I ran into some problems while running this test file, and here is the code I ran： ``` perl ../EDTA.pl --genome...
Hi Shujun, I would like to use EDTA for animal genomes. What should I prepare to make EDTA suitable for Animal genomes? Thanks very much. Wang Jinpeng
Dear Shujun, I hope you are well. When reading your benchmarking paper, “Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline” EDTA appears to do very well...
Hi, Is it possible to update the docker/ singularity container to 2.1.0 please? The current 2.0.0 version on dockerhub seems to contain the TIR Learner bug - https://github.com/oushujun/EDTA/issues/365 - ,...
Hi Shujun, Another question. I'm running panEDTA on a bunch of species. It says it's successfully reannotating the structurally annotated TEs, e.g.: > Sat Oct 14 15:10:05 EDT 2023 EDTA...
Our cluster moved from an LSF to a SLURM workload manager this year. I really enjoy using EDTA for our genome projects and ran it on a couple of assemblies...
Hi there, Thanks for developing EDTA - it's great! And I'm excited to run panEDTA - I've already successfully run EDTA on 10 related species. Apologies if this is a...
Hello, during the use of EDTA, I found that many MITE transposons are enriched in certain regions of the genome and belong to the same TE family (TE_00001032#MITE/DTM). The sequence...