EDTA

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Hi, I have tried to run EDTA at the latest version, in different ways on the HPC of my university however for each run the LINE folder is not EMPTY...

Isoris

Hi Oushujun, Thank you for providing the EDTA. I try to understand the output of panEDTA. Here's the command I executed from the ./test/README.txt file within the ../test directory: `nohup...

AnaKurdadze

文件缺失

1

您好，我在git clone 安装完edta 之后 去运行 test 文件就会出现这样的报错，请问怎么解决？ Fri Mar 22 14:24:23 CST 2024 Dependency checking: Error: AnnoSINE is not found in the AnnoSINE path ./!

Blosers

Combining RM rows

5

Hi Shujun, Thanks again for developing this amazing package! I am running the newest v.2.2. I manually increased the max divergence for fragments to be combined from 3.5 to 4.5...

aerilli

I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you tell me the result?

3

I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you...

chenHuiRu8

Hey!Have you solved your problem? I had the same problem.

1

Hey!Have you solved your problem? I had the same problem. _Originally posted by @wuyh0328 in https://github.com/oushujun/EDTA/issues/448#issuecomment-2011172734_ haven't solved yet

chenHuiRu8

dependencies not found in singularity install

4

I'm trying to use the latest image and singularity to run EDTA, it looks like EDTA can't find genometools, but I see it's installed on container. relevant info below: ```{bash}...

molikd

ERROR: Intact TE annotation not found in Aros.genome.fa.mod.EDTA.intact.gff3 at EDTA.pl line 638.

2

Hi, I ran the command "perl ~/mambaforge/envs/EDTA/bin/EDTA.pl -genome Aros.genome.fa -t 56 -sensitive 1 -anno 1 --evaluate 1 --species others --force 1",but I met a problem. The error are as follows:...

chun-he-316

make_masked.pl Permission denied

1

Hi Shujun, I want to get softmasked genome. I used this command "perl ../util/make_masked.pl -genome genome.fa -minlen 80 -hardmask 0 -t 2 -rmout genome.fa.mod.EDTA.anno/genome.fa.mod.EDTA.TEanno.out",but this error occurred "Permission denied ../util/make_masked.pl...

chun-he-316

Hello, thanks for your development of this useful tools! I met several issues when use EDTA2: 1) the file `$genome.EDTA.TEanno.split.density` didin't show the running result but the following content ...

yanyew