EDTA
EDTA copied to clipboard
oushujun
Extensive de-novo TE Annotator
Hi Shujun, I met two errors again. 1. Although I changed the flanking_filter.pl file as you advised in addf414 , It runs with the same error. I can ignore this...
Hello, I ran the EDTA with --exclude option (with --anno 1) to exclude the bed format regions from the TE annotation. However, the output file seems to contain the predicted...
Hello Dr Ou, I am raising this issue, because I got an error while I was trying to run the test example. The error I got is the following: Error:...
Hello Dr. Ou, Thank you for the tool and tutorials! However, I have the following problems when using and testing: Because I don't have root, I use CONDA to install....
Hi I want to annotate an animal genome. First I created a pan-TE library manually according to this article (https://doi.org/10.1093/molbev/msac080). Then I run RepeatMasker (sensitive mode) and the result is...
Hi, oushujun, thank you for develop this great tool for genome repeat annotation. I want to use EDTA to annotate my genome and met an error. I install EDTA v2.1.3...
Hi, when I use the EDTA.pl to annotate the plant genome, I found the run log print many similar errors like this: ```shell Sun Feb 25 12:13:23 CST 2024 Perform...
Hi Shujun, Thanks as always for EDTA! I think this is a silly question - I'm having trouble figuring out how to specify the paths for the genomes I'm putting...
Hi, I am using EDTA version 1.9.9, and the command I executed is: `perl ~/bin/EDTA/EDTA.pl --genome *.fa --overwrite 0 --sensitive 1 --anno 1 --threads 24`. The program runs normally and...
Hi Shujun, I'm annotating the over 50 maize genomes using EDTA. I ran into a weird situation where the LTR annotation results for two genomes showing as 0, while the...
