EDTA
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oushujun
Extensive de-novo TE Annotator
Hi This looks like a very useful tool. What is the expected output from the testing data? I have installed EDTA v2.2.0 via conda since when I try to use...
Hi, I have used EDTA to annotate TEs for my plant genome. Initially, I had 12 chromosomes and I ran EDTA but then I got rid of one chromosome that...
Hello, I am using EDTA v2.2.0 to process my insect genomes. The commands looks like this: `EDTA.pl --genome ${genome.fa} --species others --step all --overwrite 0 --sensitive 1 --anno 1 --threads...
Hello, Is it possible to use multiple CDS files from genbank and to combine them into a single file for panEDTA ? for instance cat cds_species1.fa cds_species2.fa cds_species3.fa > cds.fa...
Hello Shujun, Curious if the TIR elements identified using "EDTA_raw.pl --type tir" requires filtering. Its generate two files *.intact.fa and *.raw.fa, both of which are same. Does this indicate that...
Hello Shujun, Hope you are doing well. I am writing to share that I had issues with LINE detection in PanEDTA. I am hoping that this will help anyone else...
Hello author, It's a great software, and I've successfully worked with dozens of species. But when I used EDTA to work with some genomes, there is a problem: LTR, TIR,...
Hi there, thank you for such a great software! I am currently using EDTA to annotate TEs in two plant genomes assembled through PacBio hifi long reads. The repeat content...
Hi Shujun, This is not a bug report, but a question. I've noticed that when I run EDTA on Drosophila genome, it takes an extraordinary amount of time when searching...
Hi shujun Halfway through the run, it was interrupted due to insufficient running memory. Give a few more cores and resubmit the job. Will the results be affected if you...
