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Trouble testing on chromosomes

9

Hi I am testing Platon 1.6 on the E. coli chromosome accession number CP027572.1 as well as bacterial chromosomes CP045233.1 and CP011509.1. platon [–c] --db /env/ig/biobank/by-soft/platon/1.6/db/ --output …/test_ecoli_c/ --verbose …/ecoli.fasta...

Liqueurdefehling

IndexError: list index out of range error

1

Hi, I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command: ``` platon --db ~/database/db --prefix test --output ./ test.fa ```...

hbucqp

RDS is always 0.0

7

Hi! I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command: platon contigs.fasta --db ~/Databases/db --output platon_accu --mode accuracy --threads 8...

barbaracania

--meta missing

1

Hi, im using the biocontainer `quay.io/biocontainers/platon` version `1.6--pyhdfd78af_1`. Specifying `--meta` seems to be not part of the of the parameter settings even though it is mentioned in the README. ```...

pbelmann

"Marker protein search failed!" error after execution

9

**Describe the bug** Hi, I am using platon version 1.7 installed through mamba. As input I am using draft assmblies obtained from bacterial whole genome sequencing (enterobacteria, mainly klebsiella) with...

alex-trist

Any plans for enabling user to use custom database like COMPASS

1

I came across this paper https://www.frontiersin.org/articles/10.3389/fmicb.2020.00483/full which provides an exhaustive curation of Plasmids fasta file. If there can be an option to ingest such custom database and preprocess it, that...

Rohit-Satyam