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Published 20 hours ago • verified publisher icon oschwengers

--meta missing

Open pbelmann opened this issue 2 years ago • 1 comments

Hi,

im using the biocontainer quay.io/biocontainers/platon version 1.6--pyhdfd78af_1. Specifying --meta seems to be not part of the of the parameter settings even though it is mentioned in the README.

~$ platon assembly.fasta --meta  --db db --mode sensitivity -t 14
usage: platon [--db DB] [--prefix PREFIX] [--output OUTPUT] [--mode {sensitivity,accuracy,specificity}] [--characterize] [--help] [--verbose] [--threads THREADS] [--version] <genome>
platon: error: unrecognized arguments: --meta

pbelmann avatar Mar 10 '22 22:03 pbelmann

Hi @pbelmann , thanks for reaching out. The --meta flag was introduced in https://github.com/oschwengers/platon/commit/78747e89c80daaad54391ff457fad748aa9acd96 after the release of v1.6.

Therefore it is not yet available in the container. I'll compile a database update and release an 1.7 version, soon.

oschwengers avatar Mar 11 '22 12:03 oschwengers