nf-core
nf-core
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
tools
Python package with helper tools for the nf-core community.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
atacseq
ATAC-seq peak-calling and QC analysis pipeline
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
test-datasets
Test data to be used for automated testing with the nf-core pipelines
mag
Assembly and binning of metagenomes