rnasplice

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### Description of the bug When I run the rnasplice pipeline and I get the result about differential exon usage, I get a table of counts. I have used the...

SergioManzano10

ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'

10

### Description of the bug My aim was to run rnasplice to output results for SUPPA2. It is not clear whether the following is an error on my part, or...

IanCodes

Version `2.14.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...

nf-core-bot

STAGER error: subscript out of bounds

4

### Description of the bug As referenced here #83 I am still stopped at this point: `run_stager.R CP_TG-CP_WT DEXSeqResults.CP_TG-CP_WT.tsv perGeneQValue.CP_TG-CP_WT.tsv dexseq` ` Error in `[ stageWiseAdjustment -> .local -> .stageWiseTest...

paolo-kunderfranco

make contrasts file names consistent with those of the differentialabundance pipeline

1

### Description of feature **Motivation** Many projects will use a combination of `differentialabundance` and `rnasplice` analysis, using as input the processed data from `rnaseq`. Thus keeping the workflows as consistent...

adomingues