rnasplice
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make contrasts file names consistent with those of the differentialabundance pipeline
Description of feature
Motivation
Many projects will use a combination of differentialabundance
and rnasplice
analysis, using as input the processed data from rnaseq
. Thus keeping the workflows as consistent as possible would facilitate reusing files, for the user, and code, for developers.
Suggestion
The column names in the contrasts file are different from those of the differentialabundance
pipeline. Would it possible to uniformize them?
in this pipeline contrast,treatment,control
would becomes id,reference,target
as in differentialabundance This would allow the re-use of the contrast file across the two nf-core pipelines for at least the simplest comparisons.
I am suggesting the change here because it seems to me that that differentialabundance is the more mature of the two and thus change there would result in more things breaking.