Merged genes output

[SergioManzano10]

Description of the bug

When I run the rnasplice pipeline and I get the result about differential exon usage, I get a table of counts.

I have used the ENSEMBL files (fasta and gtf) to generate the sashimi plots. However, when I look at the counts table mentioned above, for some genes (like BRCA1) I get "merged" identifiers (e.g. ENSG00000267002+ENSG00000012048), so I don't know the exon counts that correspond to each gen.

I think it is due to overlapping positions.

How could I solve it?

Thank you.

Command used and terminal output

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Relevant files

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System information

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