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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
This leads to troubles when running on a cluster because a simple symlinking logic does not work there. However we want to move away from copying files which is not...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug In the nf-core Bowtie2 alignment module, the pipeline runs...
## Summary Enables CO2 footprint tracking during nf-test runs and uploads reports to S3 for analysis. - Adds `[email protected]` plugin to test configuration - Uploads all CO2 trace files to...
[Priorcons](https://github.com/GERMAN00VP/PriorCons): integrate_consensus module – generates high-quality viral consensus sequences by integrating a mapping consensus with ABACAS consensus sequences using empirically built evolutionary priors. The integration fills missing or low-quality regions...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
This PR adds modules for `trident`: - [x] trident fetch - [ ] trident validate - [ ] trident forge ## PR checklist Closes #XXX - [x] This comment contains...
## PR checklist Closes #9230 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
Update fgbio/copyumifromreadname: - Bump version to 3.0.0 - Swap to versions topic channel - Remove the `task.ext.singularity_pull_docker_container` and support apptainer (proof of concept)
