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add module: Add xengsort/classify

Open diegomscoelho opened this issue 1 year ago • 4 comments

Adds the xengsort tool, a tool for fast lightweight accurate xenograft sorting. This is a part 2 of two steps for xengsort, classifier.

First part is in review: https://github.com/nf-core/modules/pull/5370

PR checklist

Closes #5411

  • [x] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [ ] Remove all TODO statements.
  • [ ] Emit the versions.yml file.
  • [ ] Follow the naming conventions.
  • [ ] Follow the parameters requirements.
  • [ ] Follow the input/output options guidelines.
  • [ ] Add a resource label
  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [ ] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

diegomscoelho avatar Mar 30 '24 04:03 diegomscoelho

Hi @diegomscoelho , do you need some help?

SPPearce avatar Jun 16 '24 18:06 SPPearce

@diegomscoelho , do you plan to come back to this?

SPPearce avatar Aug 27 '24 05:08 SPPearce

https://github.com/nf-core/modules/pull/5370 has been closed :) do you have time to finalize this? @diegomscoelho

famosab avatar Mar 11 '25 13:03 famosab

This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.

github-actions[bot] avatar Jun 15 '25 00:06 github-actions[bot]

Closing due to inactivity :) feel free to reopen!

famosab avatar Oct 17 '25 14:10 famosab