Added module lmm and copied kinshipmatrix module

[KevinMLanderos]

PR checklist

Closes #XXX

• [ ] This comment contains a description of changes (with reason).
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
• [ ] If necessary, include test data in your PR.
• [ ] Remove all TODO statements.
• [ ] Emit the versions.yml file.
• [ ] Follow the naming conventions.
• [ ] Follow the parameters requirements.
• [ ] Follow the input/output options guidelines.
• [ ] Add a resource label
• [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [ ] nf-core modules test <MODULE> --profile docker
    • [ ] nf-core modules test <MODULE> --profile singularity
    • [ ] nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

[KevinMLanderos]

WIP

When running nf-core modules test gemma/lmm, keep getting error highlighting midas module dependency, which should not be needed

[chriswyatt1]

Thanks Kevin, I think it shoud work now. It was just a small issue with the comments using #. I removed the, and added the expected output file. Seems to work as expected, but we need to wait to merge this after we merge the kinship module

[SPPearce]

WIP

When running nf-core modules test gemma/lmm, keep getting error highlighting midas module dependency, which should not be needed

You can ignore that, that's an unrelated issue that needs fixing

[github-actions[bot]]

This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.