Mixcr

[derrik-gratz]

PR checklist

Init basic MiXCR module for TCR/BCR processing. While there is a lot more functionality in MiXCR that could be added for larger workflows (e.g. airrflow), for now this just includes MiXCR's catch-all wrapper analyze that will run the full tool. The CI framework set up here should allow easier addition & maintenance of additional MiXCR processes too, as the github secret workflow is set up.

• [x] This comment contains a description of changes (with reason).
• [x] If you've fixed a bug or added code that should be tested, add tests!
• [x] If you've added a new tool - have you followed the module conventions in the contribution docs
• [x] If necessary, include test data in your PR.
• [x] Remove all TODO statements.
• [x] Emit the versions.yml file.
• [x] Follow the naming conventions.
• [x] Follow the parameters requirements.
• [x] Follow the input/output options guidelines.
• [x] Add a resource label
• [x] ~Use BioConda and BioContainers if possible to fulfil software requirements.~
  • MiXCR does not want their software hosted on bioconda for licensing concerns
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [x] nf-core modules test <MODULE> --profile docker
    • [x] nf-core modules test <MODULE> --profile singularity
    • [x] nf-core modules test <MODULE> --profile conda