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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
This is a module to normalize scRNA-seq data. source: https://cran.r-project.org/web/packages/sctransform/index.html template: check differential/differential module ### Is there an existing module for this? - [X] I have searched for the existing...
This is a module to normalize scRNA-seq data by pooling and computing size factor. source: https://bioconductor.org/packages/release/bioc/html/scran.html template: check differential/differential module ### Is there an existing module for this? - [X]...
This is a module to normalize RNA-seq data by effective size factor. The method is called the trimmed mean of M-values. source: https://www.bioconductor.org/packages/devel/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pdf template: check differential/differential module ### Is there...
To handle QuantseqPool input for the rnaseq pipeline, I would like to add a designated demultiplexing algorithm called idemux (more info at [https://github.com/Lexogen-Tools/idemux](url) ### Is there an existing module for...
### Is your feature request related to a problem? Please describe DeepVariant has three different stages, make_example, call_variants and postprocess_variants Currently all are being called from a single nextflow process,...
Hi, I am trying to learn how to add this new module "`dysgu`" for analysing structural variant in short or long reads in `nf-core/sarek`. ```[tasklist] ### Tasks - [ ]...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
