NOVOPlasty
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ndierckx
NOVOPlasty - The organelle assembler and heteroplasmy caller
Dear all, I am trying to run NOVOPlasty4.2.pl -c config.txt but Doesn't work. my conda version is 4.13.0. I installed it from Anaconda.org https://anaconda.org/bioconda/novoplasty Also I run it as NOVOPlasty4.13.pl...
Hi, I receive the following error when trying to run NOVOPlasty v.4.3.1: `Reading Input......OK` `Building Hash Table...Use of freed value in iteration at NOVOPlasty4.3.1.pl line 4847.` Here's the config file:...
Can we use both Nanopore and Illumina reads concatenated together into a single fastq file for the Mitochondrial genome assembly using Novoplasty? Or is Novoplasty specific for Illumina Data?
Hello, I tried to assemble plant mitochondria genomes and started using the following config. The length of the merged_contigs is shorter than that of the mitochondrial genome in other related...
For some very difficult, repeat-full organelle genomes I would like to get the assembled reads in FASTQ format in order to reassemble them using Unicycler. However, at present NOVOplasty only...
I used NOVOPlasty to assemble the mitochondrial genome of my PE shotgun sequencing reads and it's been working fine. But there one sample that is simply not working. I know...
Hi, I am getting the error "INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE". Could you advise? This is my log: Input parameters from the configuration file: *** Verify...
Hello and thank you very much for developing this software :) When assembling mitogenomes using NOVOPlasty, for 2 out of 5 samples the reads have been subsampled, even though I...
I am receiving the error: THE INPUT READS HAVE AN INCORRECT FILE FORMAT! PLEASE SEND ME THE ID STRUCTURE! Here is the beginning of the forward and reverse fastq file:...
