NOVOPlasty
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ndierckx
NOVOPlasty - The organelle assembler and heteroplasmy caller
Hi Nick, I am trying to assemble mitochondrial genome for butterflies and I am getting only empty files. Also I don't get any error. Seems like it does not read...
Good day Nick, Thanks for updating and maintaining the repository. Wish you a fruitful 2019. One of many mitogenome assembly runs on an Antarctic insect species ends with producing a...
There is a problem with these recent versions where the contig result present a mirroring problem, like the image above:  Clearly the selected region is mirroring with the other...
Hi Nicolas, Hope you are doing well. I am kind of stuck in the assembly process and I thought I would ask you directly about the same here. I have...
I assembled the chloroplast genome in order to then assemble the mitochondrial genome of a plant. For the mitochondrial genome, I used the COXIII gene as a seed. But my...
My output contains 9 contigs when assembling the chloroplast genome. They have the following headers: >Contig01+58914932 >Contig02+152441912 >Contig02+152441912 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 My question is why so many...
I am assembling a fungal mitochondrial contig in order to then test for heterogeneity. I already have a fully circularized mitochondrial genome from another assembler that is ~132,000 bp, but...
Greetings, I tried to assemble plant mitochondria genome with short reads PE Ilumina raw-reads. I read from previous posts that it is hard to get a complete genome with only...
I am using the heteroplasmy detection feature and I am getting this error: 8279 bp assembledsubstr outside of string at NOVOPlasty4.3.1.pl line 11093. The numbers change for different samples or...
Hi, NOVOPlasty is a good assembler. How to use the batch NOVOplasty for many samples?
