plant mitochondria genomes

[fengyuanli304]

Hello, I tried to assemble plant mitochondria genomes and started using the following config. The length of the merged_contigs is shorter than that of the mitochondrial genome in other related species. In addition, there are many options. What should I do to improve these results? Waiting for your reply.

Sincerely log_salxi_test.txt salix_mit_config.txt

[ndierckx]

You could try to combine results of different assemblers, but in most cases plant mitochondria can only be assembled with long reads, though to high number of duplicated regions.