NOVOPlasty
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ndierckx
NOVOPlasty - The organelle assembler and heteroplasmy caller
Hi, Firstly, I'm really appreciating this software, so thanks a lot for developing it! I have a question about large variations in speed of NOVOPlasty that I'm experiencing. I am...
Hi. I am thinking about obtaining my next sequences through DNBseq (https://en.mgi-tech.com/products/instruments_info/5/) instead Illumina. As far as I can see in the NovoPlasty configuration files, the program supports reads from...
Hello, I'm trying to get the mitogenome of a damselfly. I have ddRAD 2x138 bp. I'm using a COI fragment (629 bp) as seed, from the same sample. When I...
Hello, I would like to assemble the plant mitochondrial genomes using Novoplasty. I read your recently published article, mentioned that RuBP used as a seed sequence for cp genome. But...
hello，I am trying to use this software to assemble the chloroplast genome, and the result shows INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE. I want to know where...
Hi, I am working on the integration of NOVOPlasty into [galaxy](https://github.com/galaxyproject/tools-iuc). Where can I find the files used in the Heteroplasmy test runs in this repository, e.g. `config_ERR1395547.txt ` ```...
Dear Dr. Dierckxsens, I have been using NOVOPlasty to assemble mt genomes of zoantharians using short reads (150bp) data of whole genome and a reference mtgenome. For the two species...
I have two runs of the same Illumina library and merged them using 'cat' prior to NOVOplasty. The first run's set of reads did not assemble a mitogenome, so we...
Dear all, I am trying to assemble several varieties of the same specie but all the assemblies obtained have the same genome size in all varieties. All assemblies show a...
I am new to perl. Using Strawberry perl on Windows, I have been trying to assemble the mitochondrial assembly test dataset you have provided, but keep getting this error message:...
