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Error while running postanalysis ?

1

Hello, I'm trying to run postanalysis for the first time and I'm having errors that I can't even understand. Unfortunately, I have not been able to find any solutions. **Here...

Gaut1993

Can't run mixcr 4 with the external reference

7

Hi, I was running mixcr 3 with the IMGT reference like so: ``` mixcr analyze amplicon --species mmu --starting-material rna --5-end no-v-primers --3-end c-primers --adapters no-adapters --library imgt --threads 8...

f6v

Cat TRA and TRD files are empty

5

# Expected Result Output files with TRA and TRD clones ## Actual Result TRA and TRD files are empty ## Exact MiXCR commands ``` mixcr analyze shotgun -f -t 4...

evcon131

```bash mixcr analyze amplicon \ --threads 32 \ --species mmu --starting-material dna \ --5-end no-v-primers --3-end j-primers \ --adapters no-adapters \ --receptor-type bcr --contig-assembly --region-of-interest VDJRegion --only-productive \ --assemble "-OassemblingFeatures=[FR1,CDR1,FR2,CDR2,FR3,CDR3,FR4]"...

0x1orz

``` Number of input groups: 6478545 Number of input alignments: 118169463 Number of output pre-clonotypes: 2980307 Number of clonotypes per group 0: + 1209 (0.04%) = 1209 (0.04%) 1: +...

mizraelson

assembleContigs error in scRNA data

2

##Description: Hi MiXCR team, thanks for releasing the amazing MiXCR v4.0.0. I have encountered an error when running a scRNA example to compare with the TRUST4 result. MiXCR version: newly...

FsheriF

PoslavskySV

Different results between mixcr analyze amplicon and four separate steps

2

Hi, I am analyzing TCR profiling sequencing data from SMARTer Mouse TCR ab Profiling Kit using MIXCR. The sequencing reads are from Miseq, and both reads have 300bp. I used...

wuying1984

`fraction` in exportClones for analyze with multiple chains

1

PoslavskySV

Add to the docs that `-p rna-seq` are default.

PoslavskySV