Error while running postanalysis ?

[Gaut1993]

Hello,

I'm trying to run postanalysis for the first time and I'm having errors that I can't even understand. Unfortunately, I have not been able to find any solutions.

Here is my command line :

mixcr postanalysis individual --metadata metadata.tsv --only-productive --default-downsampling count-reads-auto test.clns pa/i.pa.json.gz

Here is the output error :

picocli.CommandLine$ExecutionException: Error while running command (com.milaboratory.mixcr.cli.postanalysis.CommandPaIndividual@4482469c): java.lang.RuntimeException: java.nio.charset.MalformedInputException: Input length = 1 at picocli.CommandLine.executeUserObject(CommandLine.java:1778) at picocli.CommandLine.access$900(CommandLine.java:145) at picocli.CommandLine$RunLast.handle(CommandLine.java:2141) at com.milaboratory.mixcr.cli.Main$1.handle(Main.java:84) at com.milaboratory.mixcr.cli.Main$1.handle(Main.java:73) at picocli.CommandLine$AbstractParseResultHandler.handleParseResult(CommandLine.java:1968) at com.milaboratory.mixcr.cli.Main.handleParseResult(Main.java:95) at com.milaboratory.mixcr.cli.Main.main(Main.java:67) Caused by: java.lang.RuntimeException: java.nio.charset.MalformedInputException: Input length = 1 at com.milaboratory.mixcr.cli.postanalysis.CommandPa.metadata(CommandPa.java:216) at com.milaboratory.mixcr.cli.postanalysis.CommandPa.validate(CommandPa.java:160) at com.milaboratory.cli.ACommand.run(ACommand.java:93) at picocli.CommandLine.executeUserObject(CommandLine.java:1769) ... 7 more Caused by: java.nio.charset.MalformedInputException: Input length = 1 at java.base/java.nio.charset.CoderResult.throwException(CoderResult.java:274) at java.base/sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:352) at java.base/sun.nio.cs.StreamDecoder.read(StreamDecoder.java:188) at java.base/java.io.InputStreamReader.read(InputStreamReader.java:181) at java.base/java.io.BufferedReader.fill(BufferedReader.java:161) at java.base/java.io.BufferedReader.readLine(BufferedReader.java:326) at java.base/java.io.BufferedReader.readLine(BufferedReader.java:392) at java.base/java.nio.file.Files.readAllLines(Files.java:3399) at java.base/java.nio.file.Files.readAllLines(Files.java:3436) at com.milaboratory.mixcr.cli.postanalysis.CommandPa.metadata(CommandPa.java:214) ... 10 more

I would greately appreciate some help. Thank you.

[PoslavskySV]

Hi,

can you send us a message to [email protected] ? We will provide you instructions how to fix this.