nmdc-schema
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microbiomedata
National Microbiome Data Collaborative (NMDC) unified data model
Below is a list (in the order they should be executed) of the migration PRs to account for the schema changes in Berkeley: 1. [Migrator_from_X_to_PR23: Update the values for `execution_resource`...
#### Tasks - [ ] Determine what the initial Berkeley schema version will be (I think it will be `11.0.0`) - [ ] Determine the order in which the Berkeley...
slot link_class_info has no guidance or examples. criteria for completion - [x] identify how the slot has been used (if at all) in the past, @turbomam provide a query of...
I had previously pushed for adding them exhaustively, but it just adds more complciation.
Please do not merge. Here's a PR for a merge in the opposite direction: https://github.com/microbiomedata/berkeley-schema-fy24/pull/65
We can generate a prefix map for all the NMDC schema prefixes currently supported with their expansions using this linkml command: `poetry run gen-prefix-map src/schema/nmdc.yaml` per @aclum's request in PR...
@sujaypatil96 and I would like to write a data-driven (possibly even hypothesis testing) paper about data that can be accessed from NMDC, in comparison with data accessed from other interfaces.
see - https://linkml.io/linkml-model/latest/docs/string_serialization/ We have been misusing `string_serialization` as if it were `structured_pattern` Some of this is inherited from MIxS We can see what slots have a `string_serialization` by generating...
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National Microbiome Data Collaborative (NMDC) unified data model